Randomized,replicated, staggered clonal-row (R2SCR) seed orchard design

Spatial randomization of clones across a seed orchard’s grid is commonly applied to promote cross-fertilization and minimize selfing. The high selection differential attained from advanced-generation breeding programs sets high premier on the genetic gain and diversity delivery from seed orchards, thus clonal allocation is important and even more challenging when clones share common ancestry. Evidences of low selfing in many conifers’ seed orchards, as a result of their high genetic load, inbreeding depression, and polyembryony are abundant and call for orchards’ design re-evaluation, specifically when randomization is associated with added managerial burden. Clonal-rows represent a viable option for simplifying orchards management; however, they are often associated with elevated correlated matings between adjacent clones. Here, we propose a modified clonal-row design that replicates, staggers, and randomizes the rows, thus doubling the number of adjacent clones and providing different set of neighboring clones at each replication, thus allowing accommodating related parents more readily than any single-tree arrangement. We present a novel algorithm packaged in user-friendly software for executing various seed orchards’ designs. The developed program is interactive and suitable for any orchard size and configuration, accommodates any number of clones that are allocated to rows with variable length (ranging from a single tree to any even number) and pre-set separation zone between ramets of the same clone. The program offers three deployment modes (equal, linear, and custom) each with multiple layouts determined by the number of iterations requested. The resulting layouts are ranked based on four criteria including: (1) the number of empty positions, (2) deviation between expected and observed clone size, (3) minimum inbreeding, and (4) a neighborhood index that expresses the efficiency of clonal distribution.     

人乳头瘤病毒16E5突变与宫颈癌的研究进展

人乳头瘤病毒(Humanpapillomavirus)HPV是发生宫颈癌的必要条件,人乳头瘤病毒16E5癌基因突变与宫颈癌的发生有密切的相关性。人乳头瘤病毒E5是一种转化作用的癌蛋白,是细胞膜或内膜整合蛋白。人乳头瘤病毒E5在感染的细胞中表达。主要在感染细胞克隆早期的繁殖,扩张中起重要作用。它干预生长因子受体,干扰周期蛋白和周期蛋白激酶,促进病毒癌基因转化,抑制抑癌基因表达,激活启动子促进病毒繁殖,并通过多种机制促使损伤细胞,通过细胞周期,使宿主细胞增殖,分化延缓,恶性化。E5基因变异意味着功能有可能改变,可能机体或细胞对病毒变异株的免疫能力,与宫颈癌的发生和HPV的嗜上皮性有关,因此对人乳头瘤病毒16E5基因变异的研究对于人乳头瘤病毒16在宫颈癌发病中的作用有着不可忽略的意义。本文对人乳头瘤病毒16E5突变株在宫颈癌组织中的作用及其基因突变的研究现状进行分析。     

Colonization History,Host Distribution,Anthropogenic Influence and Landscape Features Shape Populations of White Pine Blister Rust,an Invasive Alien Tree Pathogen

White pine blister rust is caused by the fungal pathogen Cronartium ribicola J.C. Fisch (Basidiomycota, Pucciniales). This invasive alien pathogen was introduced into North America at the beginning of the 20th century on pine seedlings imported from Europe and has caused serious economic and ecological impacts. In this study, we applied a population and landscape genetics approach to understand the patterns of introduction and colonization as well as population structure and migration of C. ribicola. We characterized 1,292 samples of C. ribicola from 66 geographic locations in North America using single nucleotide polymorphisms (SNPs) and evaluated the effect of landscape features, host distribution, and colonization history on the structure of these pathogen populations. We identified eastern and western genetic populations in North America that are strongly differentiated. Genetic diversity is two to five times higher in eastern populations than in western ones, which can be explained by the repeated accidental introductions of the pathogen into northeastern North America compared with a single documented introduction into western North America. These distinct genetic populations are maintained by a barrier to gene flow that corresponds to a region where host connectivity is interrupted. Furthermore, additional cryptic spatial differentiation was identified in western populations. This differentiation corresponds to landscape features, such as mountain ranges, and also to host connectivity. We also detected genetic differentiation between the pathogen populations in natural stands and plantations, an indication that anthropogenic movement of this pathogen still takes place. These results highlight the importance of monitoring this invasive alien tree pathogen to prevent admixture of eastern and western populations where different pathogen races occur.     

红火蚁三龄、四龄幼虫肠道菌菌群多样性分析

昆虫体内细菌的多样性对昆虫的消化、营养的吸收、生长发育繁殖具有至关重要的作用.本研究利用16S rRNA基因序列,构建内生菌16S rRNA克隆文库,探明红火蚁3龄幼虫和4龄幼虫种群体内微生物菌群结构并加以对比,采用Miseq高通量测序的方法揭示红火蚁3龄幼虫与4龄幼虫肠道菌的相似性和差异性.结果表明:红火蚁高龄幼虫的两个不同发育阶段肠道菌菌群的结构及组成存在一定的差异性.3龄幼虫肠道菌的物种丰富度和物种多样性都低于4龄幼虫.红火蚁3龄、4龄幼虫体内共有183个OTU,归属于15个门、24个纲、56个目、101个科、151个属,其中3龄幼虫肠道微生物的OTU数目有51个,其优势菌群为支原菌属,比例达到95.11％;4龄幼虫肠道微生物的OTU数目有170个,其优势菌群为变形菌门的7个属,比例达到93.78％,其中优势菌属为肠杆菌属,比例达到37.10％.本研究分析了红火蚁高龄幼虫肠道菌的细菌多样性及3龄幼虫与4龄幼虫两个阶段肠道菌群的群落结构组成差异,为进一步明确红火蚁高龄幼虫肠道菌生理功能和生态学意义具有重要的参考价值.     

胆汁三烯结合蛋白在大肠杆菌中的表达、复性与纯化

目的：合成胆汁三烯结合蛋白（BBP）基因并在大肠杆菌中表达,获得重组BBP纯化制品。方法：根据天然BBP的基因序列和大肠杆菌偏好密码子设计并合成BBP基因的引物,PCR扩增优化的BBP基因序列,克隆至载体pEasy-T3;测序正确后,将该序列克隆至表达载体pET-32a上,构建表达质粒,转化至大肠杆菌BL21（DE3）pLysS,在IPTG诱导下表达融合蛋白;采用Ni柱纯化融合蛋白。结果：PCR扩增获得了优化后的BBP基因序列,构建了表达载体pET-32a-BBP;SDS-PAGE分析表明表达的融合蛋白相对分子质量为20×10^3,以包涵体形式存在,占全菌蛋白的40%以上;变性、复性后经Ni2＋柱纯化,获得纯度达98%以上的重组蛋白。结论：优化并合成了BBP全基因序列,获得了高纯度重组融合蛋白,为进一步鉴定其生物活性及筛选小分子的研究奠定了基础。     

Cells in G_2/M phase increased in human nasopharyngeal carcinoma cell line by EBV-LMP1 through activation of NF-кB and AP-1

Although previous studies showed that the principal oncoprotein encoded by Epstein-Barr virus, latentmembrane protein 1 (LMP1) 5 could induce the nasopharyngeal carcinoma cells in G_2/M phase increased, littleis known about the target molecules and mechanisms. The present study demonstrated that LMP1 couldinduce the accumulation of p53 protein and upregulate its transactivity in a dose dependent manner, whichresulted in the decrease of the kinase activity of cdc2/cyclin B complex and inducing arrest at G2/M phasethrough the activation of NF-κB and AP-1 signaling pathways, and the effect of NF-κB was more obviousthan that of AP-1. This study provided some significant evidence for further elucidating the molecularmechanisms that LMP1 had effects on the surveillance mechanism of cell cycle and promoting the survivalof transformed cells and tumorigenesis.     

岗松化学成分的研究

从岗松的石油醚和氯仿提取组分中分离得到7个化合物,根据NMR、HSQC、HMBC、IR和MS的数据分析及与文献对照,确定它们的结构为白桦脂酸(betulinic acid,1),齐墩果酸(oleanolic acid,2),没食子酸乙酯(ethyl sabre,3),5-羟基-6-甲基-7-甲氧基-二氢黄酮(5-hydroxy-6-methyl-7-methoxy-flavanone,4),5-羟基-7-甲氧基-8-甲基二氢黄酮(5-hydroxy-7-methoxy-8-methylflavanone,5),5-羟基-7-甲氧基-2-异丙基色原酮(5-hydroxy-7-methoxy-2-isopropylchromone,6)和β-谷甾醇(β-sitosterol,7).其中,化合物1～5和7为首次从该植物中分离得到.     

A Pin gene families encoding components of auxin efflux carriers in Brassica juncea

Based on the sequence information of Arabidopsis PIN1, two cDNAs encoding PIN homologues fromBrassica juncea, Bjpin2 and Bjpin3, were isolated through cDNA library screening. Bjpin2 and Bjpin3encoded proteins containing 640 and 635 amino acid residues, respectively, which shared 97.5% identities witheach other and were highly homologous to Arabidopsis PIN1, PIN2 and other putative PIN proteins. BjPIN2and BjPIN3 had similar structures as AtPIN proteins. Northern blot analysis indicated that Bjpin2 wasexpressed in stem, leaf and floral tissues, while Bjpin3 was expressed predominantly in stem and hypocotyls.Two promoter fragments of pin genes, Bjpin-X and Bjpin-Z, were isolated by ‘genome walking‘ techniqueusing primers at 5‘-end of pin cDNA. Promoter-gus fusion studies revealed the GUS activities driven byBjpin-X were at internal side of xylem and petal; while those driven by Bjpin-Z were detected at leaf vein,epidermal cell and cortex of stem, vascular tissues and anther. Results of the pin genes with differentexpression patterns in B. juncea suggested the presence of a gene family.